biofefi package¶
Subpackages¶
- biofefi.components package
- biofefi.options package
- Subpackages
- Submodules
- biofefi.options.enums module
DataAnalysisStateKeysDataAnalysisStateKeys.CorrelationHeatmapDataAnalysisStateKeys.DescriptorCorrelationDataAnalysisStateKeys.DescriptorPairPlotDataAnalysisStateKeys.NBinsDataAnalysisStateKeys.PairPlotDataAnalysisStateKeys.PerplexityDataAnalysisStateKeys.SaveHeatmapDataAnalysisStateKeys.SavePairPlotDataAnalysisStateKeys.SaveTSNEPlotDataAnalysisStateKeys.SaveTargetVarDistributionDataAnalysisStateKeys.SelectAllDescriptorsCorrelationDataAnalysisStateKeys.SelectAllDescriptorsPairPlotDataAnalysisStateKeys.SelectNormTsneDataAnalysisStateKeys.ShowKDEDataAnalysisStateKeys.TSNEPlotDataAnalysisStateKeys.TargetVarDistribution
DataPreprocessingStateKeysDataPreprocessingStateKeys.CorrelationThresholdDataPreprocessingStateKeys.DependentNormalisationDataPreprocessingStateKeys.IndependentNormalisationDataPreprocessingStateKeys.LassoFeatureSelectionDataPreprocessingStateKeys.ProceedTransformationDataPreprocessingStateKeys.RegularisationTermDataPreprocessingStateKeys.ThresholdCorrelationDataPreprocessingStateKeys.ThresholdVarianceDataPreprocessingStateKeys.VarianceThreshold
DataSplitMethodsExecutionStateKeysExecutionStateKeys.DataSplitExecutionStateKeys.DependentVariableNameExecutionStateKeys.ExperimentNameExecutionStateKeys.NormalisationExecutionStateKeys.NumberOfBootstrapsExecutionStateKeys.ProblemTypeExecutionStateKeys.RandomSeedExecutionStateKeys.UploadedFileNameExecutionStateKeys.UseHyperParamSearch
FeatureImportanceStateKeysFeatureImportanceStateKeys.EnsembleMethodsFeatureImportanceStateKeys.ExplainAllModelsFeatureImportanceStateKeys.ExplainModelsFeatureImportanceStateKeys.FILogBoxFeatureImportanceStateKeys.GlobalFeatureImportanceMethodsFeatureImportanceStateKeys.LocalImportanceFeaturesFeatureImportanceStateKeys.NumberOfImportantFeaturesFeatureImportanceStateKeys.NumberOfRepetitionsFeatureImportanceStateKeys.SaveFeatureImportanceOptionsFeatureImportanceStateKeys.SaveFeatureImportanceResultsFeatureImportanceStateKeys.ScoringFunctionFeatureImportanceStateKeys.ShapDataPercentage
FuzzyStateKeysMachineLearningStateKeysMetricsModelNamesNormalisationsOptimiserTypesPlotOptionKeysProblemTypesSvmKernelsTransformationsYViewExperimentKeys
- biofefi.options.execution module
- biofefi.options.fi module
FeatureImportanceOptionsFeatureImportanceOptions.feature_importance_ensembleFeatureImportanceOptions.fi_log_dirFeatureImportanceOptions.global_importance_methodsFeatureImportanceOptions.local_importance_methodsFeatureImportanceOptions.num_features_to_plotFeatureImportanceOptions.permutation_importance_repeatFeatureImportanceOptions.permutation_importance_scoringFeatureImportanceOptions.save_feature_importance_optionsFeatureImportanceOptions.save_feature_importance_plotsFeatureImportanceOptions.save_feature_importance_resultsFeatureImportanceOptions.shap_reduce_data
- biofefi.options.file_paths module
biofefi_experiments_base_dir()data_analysis_plots_dir()data_preprocessing_options_path()execution_options_path()fi_options_dir()fi_options_path()fi_plot_dir()fi_result_dir()fuzzy_options_path()fuzzy_plot_dir()fuzzy_result_dir()log_dir()ml_metrics_path()ml_model_dir()ml_options_path()ml_plot_dir()plot_options_path()preprocessed_data_path()uploaded_file_path()
- biofefi.options.fuzzy module
- biofefi.options.ml module
- biofefi.options.plotting module
PlottingOptionsPlottingOptions.angle_rotate_xaxis_labelsPlottingOptions.angle_rotate_yaxis_labelsPlottingOptions.plot_axis_font_sizePlottingOptions.plot_axis_tick_sizePlottingOptions.plot_colour_mapPlottingOptions.plot_colour_schemePlottingOptions.plot_font_familyPlottingOptions.plot_title_font_sizePlottingOptions.save_plots
- biofefi.options.preprocessing module
PreprocessingOptionsPreprocessingOptions.correlation_thresholdPreprocessingOptions.data_is_preprocessedPreprocessingOptions.dependent_variable_transformationPreprocessingOptions.feature_selection_methodsPreprocessingOptions.independent_variable_normalisationPreprocessingOptions.lasso_regularisation_termPreprocessingOptions.variance_threshold
- biofefi.options.search_grids module
- Module contents
- biofefi.pages package
- biofefi.services package
- Subpackages
- Submodules
- biofefi.services.configuration module
- biofefi.services.experiments module
- biofefi.services.logs module
- biofefi.services.metrics module
- biofefi.services.ml_models module
- biofefi.services.plotting module
- biofefi.services.preprocessing module
- biofefi.services.weights_init module
- Module contents
Submodules¶
biofefi.Home module¶
biofefi.launch module¶
- biofefi.launch.main()¶
The entrypoint of BioFEFI. This method shouldn’t be called explicitly. Use the biofefi command in the terminal after installing the app.